interacCircos document by Zhe Cui

Menu

  • Homepage
  • Quick start
  • Function
    • CircosArc()
    • CircosAuxLine()
    • CircosBackground()
    • CircosBubble()
    • CircosChord()
    • CircosCnv()
    • CircosGene()
    • CircosHeatmap()
    • CircosHistogram()
    • CircosLegend()
    • CircosLine()
    • CircosLink()
    • CircosLollipop()
    • CircosScatter()
    • CircosSnp()
    • CircosText()
    • CircosWig()
  • data.frame format
  • all parameters
  • Real data tutorial
  • Users from RCircos

Gallery

Download source

An interactive Circos plot indicating QTL involved in net blotch resistance and displayed using histogram, arc, link, background, text function.

Download source

An interactive Circos plot displaying the comparative genomic mapping in C. rubella(CR), A. lyrata(AL) and displayed using chord, wig, background function.

Communication

I'm a PhD student at Harbin Institute of Technology working on genome visualization and single cell ATAC sequencing.
If you have any questions about interacCircos, you are very welcome to contact me through github or email.

  • cuizhe@hit.edu.cn
  • mrcuizhe/interacCircos

If you are interested in our lab, you are very welcome to visit our website!

  • bioinformatics.hit.edu.cn

Copyright @ Harbin Institute of Technology, China.